PDE-based spatial smoothing: a practical demonstration of impacts on MRI brain extraction, tissue segmentation and registration

	PDE-based spatial smoothing: a practical demonstration of impacts on MRI brain extraction, tissue segmentation and registration
	Xing, Xiu-Xia 2; Zhou, You-Long 3; Adelstein, Jonathan S.1; Zuo, Xi-Nian1,4 ; Zuo, XN (reprint author), NYU, Langone Med Ctr, Phyllis Green & Randolph Cowen Inst Pediat Neuros, 550 1St Ave, New York, NY 10016 USA.
心理所单位排序	4
摘要	Spatial smoothing is typically used to denoise magnetic resonance imaging (MRI) data. Gaussian smoothing kernels, associated with heat equations or isotropic diffusion (ISD), are widely adopted for this purpose because of their easy implementation and efficient computation, but despite these advantages, Gaussian smoothing kernels blur the edges, curvature and texture of images. To overcome these issues, researchers have proposed anisotropic diffusion (ASD) and non-local means [i.e., diffusion (NLD)] kernels. However, these new filtering paradigms are rarely applied to MRI analyses. In the current study, using real degraded MRI data, we demonstrated the effect of denoising using ISD, ASD and NLD kernels. Furthermore, we evaluated their impact on three common preprocessing steps of MRI data analysis: brain extraction, segmentation and registration. Results suggest that NLD-based spatial smoothing is most effective at improving the quality of MRI data preprocessing and thus should become the new standard method of smoothing in MRI data processing. (C) 2011 Elsevier Inc. All rights reserved.
关键词	MRI denoise Partial differential equation Anisotropic diffusion Non-local means Brain extraction Segmentation Registration
学科领域	Physiological Psychology/biological Psychology
	2011-06-01
语种	英语
发表期刊	MAGNETIC RESONANCE IMAGING
ISSN	0730-725X
卷号	29 期号:5 页码:731-738
期刊论文类型	Article
URL	查看原文
收录类别	SCI
项目简介	The current study was partially supported by the Startup Foundation for Distinguished Research Professor of Institute for Psychology (Y0CX492S03), National Nature Science Foundation of China (10671131), the Beijing Natural Science Foundation (1092006), the Scientific Research Foundation for the Youth (X1006012200801) and the Youth Specialized in Differential Equations (X3006012200801) of Beijing University of Technology.
WOS记录号	WOS:000291292500016
资助机构	Startup Foundation for Distinguished Research Professor of Institute for Psychology [Y0CX492S03] ; National Nature Science Foundation of China [10671131] ; Beijing Natural Science Foundation [1092006] ; Scientific Research Foundation for the Youth [X1006012200801] ; Youth Specialized in Differential Equations of Beijing University of Technology [X3006012200801]
引用统计	被引频次：31[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.psych.ac.cn/handle/311026/12887
专题	中国科学院行为科学重点实验室
通讯作者	Zuo, XN (reprint author), NYU, Langone Med Ctr, Phyllis Green & Randolph Cowen Inst Pediat Neuros, 550 1St Ave, New York, NY 10016 USA.
作者单位	1.NYU, Langone Med Ctr, Phyllis Green & Randolph Cowen Inst Pediat Neuros, New York, NY 10016 USA 2.Beijing Univ Technol, Coll Appl Sci, Beijing 100124, Peoples R China 3.Henan Univ Tradit Chinese Med, Dept Acupuncture, Zhengzhou 450008, Peoples R China 4.Chinese Acad Sci, Key Lab Behav Sci, Inst Psychol, Lab Funct Connectome & Dev, Beijing 100101, Peoples R China
推荐引用方式 GB/T 7714	Xing, Xiu-Xia,Zhou, You-Long,Adelstein, Jonathan S.,et al. PDE-based spatial smoothing: a practical demonstration of impacts on MRI brain extraction, tissue segmentation and registration[J]. MAGNETIC RESONANCE IMAGING,2011,29(5):731-738.
APA	Xing, Xiu-Xia,Zhou, You-Long,Adelstein, Jonathan S.,Zuo, Xi-Nian,&Zuo, XN .(2011).PDE-based spatial smoothing: a practical demonstration of impacts on MRI brain extraction, tissue segmentation and registration.MAGNETIC RESONANCE IMAGING,29(5),731-738.
MLA	Xing, Xiu-Xia,et al."PDE-based spatial smoothing: a practical demonstration of impacts on MRI brain extraction, tissue segmentation and registration".MAGNETIC RESONANCE IMAGING 29.5(2011):731-738.

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