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PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome
Zhang, Jiajie1,2,3; Mamlouk, Amir Madany2,3; Martinetz, Thomas2,3; Chang, Suhua4; Wang, Jing4; Hilgenfeld, Rolf1,2,5,6; Hilgenfeld, R (reprint author), Med Univ Lubeck, Ctr Struct & Cell Biol Med, Inst Biochem, Ratzeburger Allee 160, D-23538 Lubeck, Germany.
2011-06-20
Source PublicationBMC BIOINFORMATICS
ISSN1471-2105
SubtypeArticle
Volume12Issue:1Pages:248
Contribution Rank4
AbstractBackground: Results of phylogenetic analysis are often visualized as phylogenetic trees. Such a tree can typically only include up to a few hundred sequences. When more than a few thousand sequences are to be included, analyzing the phylogenetic relationships among them becomes a challenging task. The recent frequent outbreaks of influenza A viruses have resulted in the rapid accumulation of corresponding genome sequences. Currently, there are more than 7500 influenza A virus genomes in the database. There are no efficient ways of representing this huge data set as a whole, thus preventing a further understanding of the diversity of the influenza A virus genome.
Subject AreaPsychology Research Method,Medical Psychology
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Indexed BySCI
Language英语
Funding OrganizationGraduate School for Computing in Medicine and Life Sciences, University of Lubeck ; Germany's Excellence Initiative [DFG] [GSC 235/1] ; International Consortium on Antivirals ; Chinese Academy of Sciences [2010T1S6] ; Fonds der Chemischen Industrie
Project Intro.We acknowledge support by the Graduate School for Computing in Medicine and Life Sciences, University of Lubeck.Funding: Germany's Excellence Initiative [DFG GSC 235/1]; International Consortium on Antivirals (http://www.icav-citav.ca). RH is supported by a Chinese Academy of Sciences Visiting Professorship for Senior International Scientists, grant no. 2010T1S6, and by the Fonds der Chemischen Industrie.
WOS IDWOS:000293082700001
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Document Type期刊论文
Identifierhttp://ir.psych.ac.cn/handle/311026/12895
Collection健康与遗传心理学研究室
Corresponding AuthorHilgenfeld, R (reprint author), Med Univ Lubeck, Ctr Struct & Cell Biol Med, Inst Biochem, Ratzeburger Allee 160, D-23538 Lubeck, Germany.
Affiliation1.Med Univ Lubeck, Ctr Struct & Cell Biol Med, Inst Biochem, D-23538 Lubeck, Germany
2.Med Univ Lubeck, Grad Sch Comp Med & Life Sci, D-23538 Lubeck, Germany
3.Med Univ Lubeck, Inst Neuro & Bioinformat, D-23538 Lubeck, Germany
4.Chinese Acad Sci, Inst Psychol, Key Lab Mental Hlth, Beijing 100101, Peoples R China
5.DESY, Lab Struct Biol Infect & Inflammat, D-22603 Hamburg, Germany
6.Chinese Acad Sci, Shanghai Inst Mat Med, Shanghai 201203, Peoples R China
Recommended Citation
GB/T 7714
Zhang, Jiajie,Mamlouk, Amir Madany,Martinetz, Thomas,et al. PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome[J]. BMC BIOINFORMATICS,2011,12(1):248.
APA Zhang, Jiajie.,Mamlouk, Amir Madany.,Martinetz, Thomas.,Chang, Suhua.,Wang, Jing.,...&Hilgenfeld, R .(2011).PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome.BMC BIOINFORMATICS,12(1),248.
MLA Zhang, Jiajie,et al."PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome".BMC BIOINFORMATICS 12.1(2011):248.
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