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A Japanese-specific allele in the GALNT11 gene
Yuasa, Isao1; Umetsu, Kazuo2; Matsusue, Aya3; Nishimukai, Hiroaki4; Harihara, Shinji5; Fukumori, Yasuo6; Saitou, Naruya7; Jin, Feng8; Chattopadhyay, Prasanta K.9; Henke, Lotte10; Henke, Juergen10
Source PublicationLEGAL MEDICINE
AbstractIn this study, five single nucleotide polymorphisms (SNPs) in the ABCC4, FBN1, CEP152, ZNF804B, and GALNT11 genes were investigated to assess allele frequencies in 14 different populations by a novel pentaplex PCR method. All SNPs were polymorphic in East Asians, whereas mutant alleles were absent or rare in non-East Asians. The frequencies of a mutant allele in FBN1 (rs140598) showed a north-south downward cline in East Asia, whereas those of a mutant allele in ZNF804B (rs1916830) were relatively uniform in East Asia. The highest frequencies of mutant alleles in ABCC4 (rs3765534), CEP152 (rs2289178), and GALNT11 (rs3778922) were observed in Okinawa. The mutant allele in GALNT11 was found only in Far-East Asian populations: the frequencies were about 0.153 in Okinawa, 0.076 in the main island of Japan, and 0.017-0.004 in Korea. These five East Asian- and Japanese-specific SNPs would be useful markers for forensic individualization, in particular, as ancestry-informative markers. (C) 2010 Elsevier Ireland Ltd. All rights reserved.
KeywordAncestry-informative markers (AIMS) Genotyping Single nucleotide polymorphism (SNP) Population-specific Population study
Indexed BySCI
WOS IDWOS:000279046500010
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Document Type期刊论文
Affiliation1.Tottori Univ, Fac Med, Div Legal Med, Yonago, Tottori 6838503, Japan
2.Yamagata Univ, Fac Med, Dept Forens Med, Yamagata 990, Japan
3.Fukuoka Univ, Sch Med, Dept Forens Med, Fukuoka 81401, Japan
4.Ehime Univ, Sch Med, Div Legal Med, Matsuyama, Ehime 790, Japan
5.Univ Tokyo, Grad Sch Sci, Dept Biol Sci, Tokyo 113, Japan
6.Osaka Red Cross Blood Ctr, Osaka, Japan
7.Natl Inst Genet, Div Populat Genet, Mishima, Shizuoka 411, Japan
8.Chinese Acad Sci, Inst Psychol, Beijing 100101, Peoples R China
9.Amity Inst Forens Sci, New Delhi, India
10.Inst Blutgrp Forsch, Cologne, Germany
Recommended Citation
GB/T 7714
Yuasa, Isao,Umetsu, Kazuo,Matsusue, Aya,et al. A Japanese-specific allele in the GALNT11 gene[J]. LEGAL MEDICINE,2010,12(4):208-211.
APA Yuasa, Isao.,Umetsu, Kazuo.,Matsusue, Aya.,Nishimukai, Hiroaki.,Harihara, Shinji.,...&Henke, Juergen.(2010).A Japanese-specific allele in the GALNT11 gene.LEGAL MEDICINE,12(4),208-211.
MLA Yuasa, Isao,et al."A Japanese-specific allele in the GALNT11 gene".LEGAL MEDICINE 12.4(2010):208-211.
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