Analysis of miRNA expression profiles in the liver of Clock(Delta 19) mutant mice | |
Wang, Yanli1; Lv, Ke2; Zhao, Mei3; Chen, Hailong2; Ji, Guohua2; Zhang, Yongliang1; Wang, Tingmei1; Cao, Hongqing2; Li, Yinghui1,2; Qu, Lina2 | |
第一作者 | Wang, Yanli |
通讯作者邮箱 | lina qu, linaqu@263.net |
心理所单位排序 | 3 |
摘要 | The circadian clock controls the physiological functions of many tissues including the liver via an autoregulatory transcriptional-translational feedback loop, of which CLOCK is a core positive component. In addition, many studies have indicated that microRNAs (miRNAs) regulate liver function. However, how CLOCK-regulated miRNAs are linked to liver function remains largely unknown. In this study, miRNAs expression profiles were performed in the liver of Clock(Delta 19) mutant mice. Compared to wild type mice, totals of 61 and 57 putative CLOCK-regulated miRNAs were differentially expressed (fold change absolute value >= 2) at zeitgeber time 2 and zeitgeber time 14, respectively. According to the pathway analyses, the target genes of differentially expressed miRNAs were mainly involved in pathways in cancer, the PI3K-Akt signaling pathway and the MAPK signaling pathway. Protein-protein interaction analyses revealed that the hub genes were primarily associated with pathway in cancer and circadian rhythms. Expression validation showed that while the expression levels of miR-195 and miR-340 were up-regulated, the rhythms of these two miRNAs were always maintained. The expression level of nr1d2 mRNA was down-regulated. We identified a number of prospective CLOCK-regulated miRNAs that play roles in the various physiological processes of the liver, providing a reference to better understanding the potential regulatory mechanisms in the liver. |
关键词 | Liver Clock mutation Circadian rhythms miRNAs |
2019-11-28 | |
语种 | 英语 |
DOI | 10.7717/peerj.8119 |
发表期刊 | PEERJ |
ISSN | 2167-8359 |
卷号 | 7页码:19 |
期刊论文类型 | article |
收录类别 | SCI |
资助项目 | National Major Scientific Instrument and Equipment Development Project[2013YQ19046706] ; National Major Scientific Instrument and Equipment Development Project[2012YQ0401400901] ; Foundation of Advanced Space Medico-Engineering Research Project of China[2015SY54A0501] ; State Key Laboratory of Space Medicine Fundamentals and Application in China[SMFA09A06] |
出版者 | PEERJ INC |
WOS关键词 | CIRCADIAN CLOCK ; OSCILLATIONS ; METABOLISM ; PROMOTES ; TARGET ; FOXO1 ; RNAS |
WOS研究方向 | Science & Technology - Other Topics |
WOS类目 | Multidisciplinary Sciences |
WOS记录号 | WOS:000499695500006 |
资助机构 | National Major Scientific Instrument and Equipment Development Project ; Foundation of Advanced Space Medico-Engineering Research Project of China ; State Key Laboratory of Space Medicine Fundamentals and Application in China |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.psych.ac.cn/handle/311026/30526 |
专题 | 健康与遗传心理学研究室 |
通讯作者 | Li, Yinghui; Qu, Lina |
作者单位 | 1.Northwestern Polytech Univ, Sch Life Sci, Xian, Shaanxi, Peoples R China 2.China Astronaut Res & Training Ctr, State Key Lab Space Med Fundamentals & Applicat, Beijing, Peoples R China 3.Chinese Acad Sci, Inst Psychol, Beijing, Peoples R China |
推荐引用方式 GB/T 7714 | Wang, Yanli,Lv, Ke,Zhao, Mei,et al. Analysis of miRNA expression profiles in the liver of Clock(Delta 19) mutant mice[J]. PEERJ,2019,7:19. |
APA | Wang, Yanli.,Lv, Ke.,Zhao, Mei.,Chen, Hailong.,Ji, Guohua.,...&Qu, Lina.(2019).Analysis of miRNA expression profiles in the liver of Clock(Delta 19) mutant mice.PEERJ,7,19. |
MLA | Wang, Yanli,et al."Analysis of miRNA expression profiles in the liver of Clock(Delta 19) mutant mice".PEERJ 7(2019):19. |
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Analysis of miRNA ex(6491KB) | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | 请求全文 |
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