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Analysis of miRNA expression profiles in the liver of Clock(Delta 19) mutant mice
Wang, Yanli1; Lv, Ke2; Zhao, Mei3; Chen, Hailong2; Ji, Guohua2; Zhang, Yongliang1; Wang, Tingmei1; Cao, Hongqing2; Li, Yinghui1,2; Qu, Lina2
第一作者Wang, Yanli
通讯作者邮箱lina qu, linaqu@263.net
心理所单位排序3
摘要

The circadian clock controls the physiological functions of many tissues including the liver via an autoregulatory transcriptional-translational feedback loop, of which CLOCK is a core positive component. In addition, many studies have indicated that microRNAs (miRNAs) regulate liver function. However, how CLOCK-regulated miRNAs are linked to liver function remains largely unknown. In this study, miRNAs expression profiles were performed in the liver of Clock(Delta 19) mutant mice. Compared to wild type mice, totals of 61 and 57 putative CLOCK-regulated miRNAs were differentially expressed (fold change absolute value >= 2) at zeitgeber time 2 and zeitgeber time 14, respectively. According to the pathway analyses, the target genes of differentially expressed miRNAs were mainly involved in pathways in cancer, the PI3K-Akt signaling pathway and the MAPK signaling pathway. Protein-protein interaction analyses revealed that the hub genes were primarily associated with pathway in cancer and circadian rhythms. Expression validation showed that while the expression levels of miR-195 and miR-340 were up-regulated, the rhythms of these two miRNAs were always maintained. The expression level of nr1d2 mRNA was down-regulated. We identified a number of prospective CLOCK-regulated miRNAs that play roles in the various physiological processes of the liver, providing a reference to better understanding the potential regulatory mechanisms in the liver.

关键词Liver Clock mutation Circadian rhythms miRNAs
2019-11-28
语种英语
DOI10.7717/peerj.8119
发表期刊PEERJ
ISSN2167-8359
卷号7页码:19
期刊论文类型article
收录类别SCI
资助项目National Major Scientific Instrument and Equipment Development Project[2013YQ19046706] ; National Major Scientific Instrument and Equipment Development Project[2012YQ0401400901] ; Foundation of Advanced Space Medico-Engineering Research Project of China[2015SY54A0501] ; State Key Laboratory of Space Medicine Fundamentals and Application in China[SMFA09A06]
出版者PEERJ INC
WOS关键词CIRCADIAN CLOCK ; OSCILLATIONS ; METABOLISM ; PROMOTES ; TARGET ; FOXO1 ; RNAS
WOS研究方向Science & Technology - Other Topics
WOS类目Multidisciplinary Sciences
WOS记录号WOS:000499695500006
资助机构National Major Scientific Instrument and Equipment Development Project ; Foundation of Advanced Space Medico-Engineering Research Project of China ; State Key Laboratory of Space Medicine Fundamentals and Application in China
引用统计
被引频次:6[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.psych.ac.cn/handle/311026/30526
专题健康与遗传心理学研究室
通讯作者Li, Yinghui; Qu, Lina
作者单位1.Northwestern Polytech Univ, Sch Life Sci, Xian, Shaanxi, Peoples R China
2.China Astronaut Res & Training Ctr, State Key Lab Space Med Fundamentals & Applicat, Beijing, Peoples R China
3.Chinese Acad Sci, Inst Psychol, Beijing, Peoples R China
推荐引用方式
GB/T 7714
Wang, Yanli,Lv, Ke,Zhao, Mei,et al. Analysis of miRNA expression profiles in the liver of Clock(Delta 19) mutant mice[J]. PEERJ,2019,7:19.
APA Wang, Yanli.,Lv, Ke.,Zhao, Mei.,Chen, Hailong.,Ji, Guohua.,...&Qu, Lina.(2019).Analysis of miRNA expression profiles in the liver of Clock(Delta 19) mutant mice.PEERJ,7,19.
MLA Wang, Yanli,et al."Analysis of miRNA expression profiles in the liver of Clock(Delta 19) mutant mice".PEERJ 7(2019):19.
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