Institutional Repository of Key Laboratory of Behavioral Science, CAS
Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers | |
Cohen-Adad, Julien1,2,3; Alonso-Ortiz, Eva1; Abramovic, Mihael4; Arneitz, Carina4; Atcheson, Nicole5; Barlow, Laura6; Barry, Robert L.7,8,9; Barth, Markus10; Battiston, Marco11; Buchel, Christian12; Budde, Matthew13; Callot, Virginie14,15; Combes, Anna J. E.16; De Leener, Benjamin17,18; Descoteaux, Maxime19,20; de Sousa, Paulo Loureiro21; Dostal, Marek22,23; Doyon, Julien24; Dvorak, Adam25; Eippert, Falk26; Epperson, Karla R.27; Epperson, Kevin S.27; Freund, Patrick28; Finsterbusch, Jurgen12; Foias, Alexandru1; Fratini, Michela29,30; Fukunaga, Issei31; Gandini Wheeler-Kingshott, Claudia A. M.11,32,33; Germani, Giancarlo33; Gilbert, Guillaume34; Giove, Federico30,35,36; Gros, Charley1,5; Grussu, Francesco11,37; Hagiwara, Akifumi31; Henry, Pierre-Gilles38; Horak, Tomas39; Hori, Masaaki40; Joers, James38; Kamiya, Kouhei41; Karbasforoushan, Haleh42,43; Kerkovsky, Milos22,23; Khatibi, Ali24,44; Kim, Joo-Won45; Kinany, Nawal46,47; Kitzler, Hagen H.48; Kolind, Shannon6,25,49; Kong, Yazhuo50,51,52; Kudlicka, Petr39; Kuntke, Paul48; Kurniawan, Nyoman D.5; Kusmia, Slawomir53,54,55; Labounek, Rene56,57,58; Lagana, Maria Marcella59; Laule, Cornelia60,61,62,63; Law, Christine S.64; Lenglet, Christophe38; Leutritz, Tobias65; Liu, Yaou66,67; Llufriu, Sara68,69; Mackey, Sean64; Martinez-Heras, Eloy68,69; Mattera, Loan70; Nestrasil, Igor38,56; O'Grady, Kristin P.16,71; Papinutto, Nico72; Papp, Daniel1,52; Pareto, Deborah73; Parrish, Todd B.42; Pichiecchio, Anna32,33; Prados, Ferran11,54,74; Rovira, Alex73; Ruitenberg, Marc J.; Samson, Rebecca S.11; Savini, Giovanni33; Seif, Maryam28,65; Seifert, Alan C.45; Smith, Alex K.52; Smith, Seth A.16,71; Smith, Zachary A.75,76; Solana, Elisabeth68,69; Suzuki, Y.41; Tackley, George53; Tinnermann, Alexandra12; Valosek, Jan77,78; van de Ville, Dimitri46,47; Yiannakas, Marios C.11; Weber, Kenneth A. ., II64; Weiskopf, Nikolaus65,79; Wise, Richard G.53,80; Wyss, Patrik O.4; Xu, Junqian45 | |
第一作者 | Cohen-Adad, Julien |
摘要 | In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject dataset across 42 centers (for a total of 260 participants), spanning the three main MRI manufacturers: GE, Philips and Siemens. Both datasets are publicly available via git-annex. Data were analysed using the Spinal Cord Toolbox to produce normative values as well as inter/intra-site and inter/intra-manufacturer statistics. Reproducibility for the spine generic protocol was high across sites and manufacturers, with an average inter-site coefficient of variation of less than 5% for all the metrics. Full documentation and results can be found at https://spine-generic.rtfd.io/. The datasets and analysis pipeline will help pave the way towards accessible and reproducible quantitative MRI in the spinal cord. |
2021-08-16 | |
语种 | 英语 |
DOI | 10.1038/s41597-021-00941-8 |
发表期刊 | SCIENTIFIC DATA |
卷号 | 8期号:1页码:17 |
收录类别 | SCI |
资助项目 | (Concordia University), Ives Levesque (McGill University) - Canada Research Chair in Quantitative Magnetic Resonance Imaging ; Canadian Institute of Health Research[CIHR FDN-143263] ; Canada Foundation for Innovation[32454] ; Canada Foundation for Innovation[34824] ; Fonds de Recherche du Quebec Sante[28826] ; Fonds de Recherche du Quebec-Nature et Technologies[2015-PR-182754] ; Natural Sciences and Engineering Research Council of Canada[435897-2013] ; Canada First Research Excellence Fund ; Spinal Research (UK) ; Wings for Life (Austria)[169111] ; Craig H. Neilsen Foundation (USA) ; National Institutes of Health (NIH)[R00EB016689] ; National Institutes of Health (NIH)[R01EB027779] ; Instituto Investigacion Carlos III (Spain)[PI18/00823] ; Czech Health Research Council[NV18-04-00159] ; Ministry of Health, Czech Republic -conceptual development of research organization[65269705] ; SpinalCure Australia ; European Research Council under the European Union[616905] ; Max Planck Society ; European Research Council[ERC StG 758974] ; European Union[681094] ; Swiss State Secretariat for Education, Research and Innovation (SERI)[15.0137] ; Swiss State Secretariat for Education, Research and Innovation (SERI)[01EW1711A] ; Swiss State Secretariat for Education, Research and Innovation (SERI)[634541] ; Engineering and Physical Sciences Research Council[R006032/1] ; Engineering and Physical Sciences Research Council[M020533/1] ; Rosetrees Trust (UK), UK Multiple Sclerosis Society[892/08] ; Rosetrees Trust (UK), UK Multiple Sclerosis Society[77/2017] ; Italian Ministry of Health Young Researcher Grant[GR-2013-02358177] ; FISR Project - MIUR/CNR[CUP B83B17000010001] ; Regione Puglia[MDBR-17-123-MPS] ; AstraZeneca ; CRIS Cancer Foundation ; Wellcome Trust (UK)[203139/Z/16/Z] ; Swiss National Science Foundation |
出版者 | NATURE PORTFOLIO |
WOS关键词 | OF-THE-ART ; MAGNETIZATION-TRANSFER ; MATTER ; WHITE |
WOS研究方向 | Science & Technology - Other Topics |
WOS类目 | Multidisciplinary Sciences |
WOS记录号 | WOS:000686651700001 |
WOS分区 | Q1 |
资助机构 | (Concordia University), Ives Levesque (McGill University) - Canada Research Chair in Quantitative Magnetic Resonance Imaging ; Canadian Institute of Health Research ; Canada Foundation for Innovation ; Fonds de Recherche du Quebec Sante ; Fonds de Recherche du Quebec-Nature et Technologies ; Natural Sciences and Engineering Research Council of Canada ; Canada First Research Excellence Fund ; Spinal Research (UK) ; Wings for Life (Austria) ; Craig H. Neilsen Foundation (USA) ; National Institutes of Health (NIH) ; Instituto Investigacion Carlos III (Spain) ; Czech Health Research Council ; Ministry of Health, Czech Republic -conceptual development of research organization ; SpinalCure Australia ; European Research Council under the European Union ; Max Planck Society ; European Research Council ; European Union ; Swiss State Secretariat for Education, Research and Innovation (SERI) ; Engineering and Physical Sciences Research Council ; Rosetrees Trust (UK), UK Multiple Sclerosis Society ; Italian Ministry of Health Young Researcher Grant ; FISR Project - MIUR/CNR ; Regione Puglia ; AstraZeneca ; CRIS Cancer Foundation ; Wellcome Trust (UK) ; Swiss National Science Foundation |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.psych.ac.cn/handle/311026/39983 |
专题 | 中国科学院行为科学重点实验室 |
通讯作者 | Cohen-Adad, Julien |
作者单位 | 1.Polytech Montreal, Inst Biomed Engn, NeuroPoly Lab, Montreal, PQ, Canada 2.Univ Montreal, Funct Neuroimaging Unit, CRIUGM, Montreal, PQ, Canada 3.Mila Quebec AI Inst, Montreal, PQ, Canada 4.Swiss Parapleg Ctr, Dept Radiol, Nottwil, Switzerland 5.Univ Queensland, Ctr Adv Imaging, Brisbane, Qld, Australia 6.Univ British Columbia, Dept Radiol, Vancouver, BC, Canada 7.Massachusetts Gen Hosp, Dept Radiol, Athinoula A Martinos Ctr Biomed Imaging, Charlestown, MA USA 8.Harvard Med Sch, Dept Radiol, Boston, MA 02115 USA 9.Harvard Massachusetts Inst Technol Hlth Sci & Tec, Cambridge, MA USA 10.Univ Queensland, Sch Informat Technol & Elect Engn, Brisbane, Qld, Australia 11.UCL, UCL Queen Sq Inst Neurol, Queen Sq MS Ctr, NMR Res Unit,Fac Brain Sci, London, England 12.Univ Med Ctr Hamburg Eppendorf, Dept Syst Neurosci, Hamburg, Germany 13.Med Coll Wisconsin, Dept Neurosurg, Milwaukee, WI 53226 USA 14.Aix Marseille Univ, CNRS, CRMBM, Marseille, France 15.Hop Univ Timone, AP HM, CEMEREM, Marseille, France 16.Vanderbilt Univ, Med Ctr, Inst Imaging Sci, Nashville, TN USA 17.Polytech Montreal, Dept Comp & Software Engn, Montreal, PQ, Canada 18.CHU St Justine Res Ctr, Montreal, PQ, Canada 19.CIMS, Ctr Rech CHUS, Sherbrooke, PQ, Canada 20.Univ Sherbrooke, Comp Sci Dept, Sherbrooke Connect Imaging Lab SCIL, Sherbrooke, PQ, Canada 21.Univ Strasbourg, CNRS, ICube, Strasbourg, France 22.UHB Univ Hosp Brno, Brno, Czech Republic 23.Masaryk Univ, Dept Radiol & Nucl Med, Brno, Czech Republic 24.McGill Univ, Montreal Neurol Inst, McConnell Brain Imaging Ctr, Montreal, PQ, Canada 25.Univ British Columbia, Dept Phys & Astron, Vancouver, BC, Canada 26.Max Planck Inst Human Cognit & Brain Sci, Leipzig, Germany 27.Stanford Univ, Sch Med, Richard M Lucas Ctr, Stanford, CA 94305 USA 28.Univ Zurich, Spinal Cord Injury Ctr Balgrist, Zurich, Switzerland 29.CNR, Inst Nanotechnol, Rome, Italy 30.IRCCS Santa Lucia Fdn, Rome, Italy 31.Juntendo Univ, Dept Radiol, Sch Med, Tokyo, Japan 32.Univ Pavia, Dept Brain & Behav Sci, Pavia, Italy 33.IRCCS Mondino Fdn, Brain MRI 3T Res Ctr, Pavia, Italy 34.Philips Healthcare, MR Clin Sci, Markham, ON, Canada 35.CREF Museo Storico Fis, Rome, Italy 36.Ctr Studi & Ric Enrico Fermi, Rome, Italy 37.Vall dHebron Barcelona Hosp Campus, Vall dHebron Inst Oncol, Radiom Grp, Barcelona, Spain 38.Univ Minnesota, Dept Radiol, Ctr Magnet Resonance Res, Minneapolis, MN 55455 USA 39.Cent European Inst Technol CEITEC, Multimodal & Funct Imaging Lab, Brno, Czech Republic 40.Toho Univ, Dept Radiol, Omori Med Ctr, Tokyo, Japan 41.Univ Tokyo, Dept Radiol, Tokyo, Japan 42.Northwestern Univ, Interdept Neurosci Program, Feinberg Sch Med, Chicago, IL 60611 USA 43.Stanford Univ, Sch Med, Dept Psychiat & Behav Sci, Stanford, CA 94305 USA 44.Univ Birmingham, Ctr Precis Rehabil Spinal Pain CPR Spine, Sch Sport Exercise & Rehabil Sci, Coll Life & Environm Sci, Birmingham, W Midlands, England 45.Icahn Sch Med Mt Sinai, Dept Radiol, BioMed Engn & Imaging Inst BMEII, New York, NY 10029 USA 46.Ecole Polytech Fed Lausanne, Ctr Neuroprosthet, Inst Bioengn, Geneva, Switzerland 47.Univ Geneva, Dept Radiol & Med Informat, Geneva, Switzerland 48.Tech Univ Dresden, Carl Gustav Carus Univ Hosp, Inst Diagnost & Intervent Neuroradiol, Dresden, Germany 49.Univ British Columbia, Dept Med Neurol, Vancouver, BC, Canada 50.Chinese Acad Sci, Inst Psychol, CAS Key Lab Behav Sci, Beijing, Peoples R China 51.Univ Chinese Acad Sci, Dept Psychol, Beijing, Peoples R China 52.Univ Oxford, Nuffield Dept Clin Neurosci, Wellcome Ctr Integrat Neuroimaging, FMRIB, Oxford, England 53.Cardiff Univ, CUBRIC, Cardiff, Wales 54.UCL, Med Phys & Biomed Engn Dept, Ctr Med Image Comp CMIC, London, England 55.Epilepsy Soc MRI Unit, Gerrards Cross, England 56.Univ Minnesota, Dept Pediat, Div Clin Behav Neurosci, Minneapolis, MN 55455 USA 57.Univ Hosp Olomouc, Dept Neurol, Olomouc, Czech Republic 58.Univ Hosp Olomouc, Dept Biomed Engn, Olomouc, Czech Republic 59.IRCCS Fdn Don Carlo Gnocchi ONLUS, Milan, Italy 60.Univ British Columbia, Dept Radiol, Vancouver, BC, Canada 61.Univ British Columbia, Dept Pathol & Lab Med, Vancouver, BC, Canada 62.Univ British Columbia, Dept Phys & Astron, Vancouver, BC, Canada 63.Univ British Columbia, Int Collaborat Repair Discoveries ICORD, Vancouver, BC, Canada 64.Stanford Univ, Sch Med, Dept Anesthesiol Perioperat & Pain Med, Div Pain Med, Stanford, CA 94305 USA 65.Max Planck Inst Human Cognit & Brain Sci, Dept Neurophys, Leipzig, Germany 66.Capital Med Univ, Beijing Tiantan Hosp, Dept Radiol, Beijing, Peoples R China 67.China Natl Clin Res Ctr Neurol Dis, Tiantan Image Res Ctr, Beijing, Peoples R China 68.Hosp Clin Barcelona, Inst Invest Biomed August Pi & Sunyer IDIBAPS, Lab Adv Imaging Neuroimmunol Dis, Ctr Neuroimmunol, Barcelona, Spain 69.Univ Barcelona, Barcelona, Spain 70.Fdn Campus Biotech Geneve, CH-1202 Geneva, Switzerland 71.Vanderbilt Univ, Med Ctr, Dept Radiol, Nashville, TN 37232 USA 72.Univ Calif San Francisco, Dept Neurol, UCSF Weill Inst Neurosci, San Francisco, CA 94143 USA 73.Vall dHebron Univ Hosp, Neuroradiol Sect, Barcelona, Spain 74.Univ Oberta Catalunya, E Hlth Ctr, Barcelona, Spain 75.Univ Queensland, Sch Biomed Sci, Fac Med, Brisbane, Qld, Australia 76.Univ Oklahoma, Hlth Sci Ctr, Oklahoma City, OK USA 77.Palacky Univ, Fac Med & Dent, Dept Neurol, Olomouc, Czech Republic 78.Univ Hosp Olomouc, Olomouc, Czech Republic 79.Univ Leipzig, Felix Bloch Inst Solid State Phys, Fac Phys & Earth Sci, Leipzig, Germany 80.G DAnnunzio Univ Chieti Pescara, Dept Neurosci Imaging & Clin Sci, Inst Adv Biomed Technol, Chieti, Italy |
推荐引用方式 GB/T 7714 | Cohen-Adad, Julien,Alonso-Ortiz, Eva,Abramovic, Mihael,et al. Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers[J]. SCIENTIFIC DATA,2021,8(1):17. |
APA | Cohen-Adad, Julien.,Alonso-Ortiz, Eva.,Abramovic, Mihael.,Arneitz, Carina.,Atcheson, Nicole.,...&Xu, Junqian.(2021).Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers.SCIENTIFIC DATA,8(1),17. |
MLA | Cohen-Adad, Julien,et al."Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers".SCIENTIFIC DATA 8.1(2021):17. |
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