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Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers
Cohen-Adad, Julien1,2,3; Alonso-Ortiz, Eva1; Abramovic, Mihael4; Arneitz, Carina4; Atcheson, Nicole5; Barlow, Laura6; Barry, Robert L.7,8,9; Barth, Markus10; Battiston, Marco11; Buchel, Christian12; Budde, Matthew13; Callot, Virginie14,15; Combes, Anna J. E.16; De Leener, Benjamin17,18; Descoteaux, Maxime19,20; de Sousa, Paulo Loureiro21; Dostal, Marek22,23; Doyon, Julien24; Dvorak, Adam25; Eippert, Falk26; Epperson, Karla R.27; Epperson, Kevin S.27; Freund, Patrick28; Finsterbusch, Jurgen12; Foias, Alexandru1; Fratini, Michela29,30; Fukunaga, Issei31; Gandini Wheeler-Kingshott, Claudia A. M.11,32,33; Germani, Giancarlo33; Gilbert, Guillaume34; Giove, Federico30,35,36; Gros, Charley1,5; Grussu, Francesco11,37; Hagiwara, Akifumi31; Henry, Pierre-Gilles38; Horak, Tomas39; Hori, Masaaki40; Joers, James38; Kamiya, Kouhei41; Karbasforoushan, Haleh42,43; Kerkovsky, Milos22,23; Khatibi, Ali24,44; Kim, Joo-Won45; Kinany, Nawal46,47; Kitzler, Hagen H.48; Kolind, Shannon6,25,49; Kong, Yazhuo50,51,52; Kudlicka, Petr39; Kuntke, Paul48; Kurniawan, Nyoman D.5; Kusmia, Slawomir53,54,55; Labounek, Rene56,57,58; Lagana, Maria Marcella59; Laule, Cornelia60,61,62,63; Law, Christine S.64; Lenglet, Christophe38; Leutritz, Tobias65; Liu, Yaou66,67; Llufriu, Sara68,69; Mackey, Sean64; Martinez-Heras, Eloy68,69; Mattera, Loan70; Nestrasil, Igor38,56; O'Grady, Kristin P.16,71; Papinutto, Nico72; Papp, Daniel1,52; Pareto, Deborah73; Parrish, Todd B.42; Pichiecchio, Anna32,33; Prados, Ferran11,54,74; Rovira, Alex73; Ruitenberg, Marc J.; Samson, Rebecca S.11; Savini, Giovanni33; Seif, Maryam28,65; Seifert, Alan C.45; Smith, Alex K.52; Smith, Seth A.16,71; Smith, Zachary A.75,76; Solana, Elisabeth68,69; Suzuki, Y.41; Tackley, George53; Tinnermann, Alexandra12; Valosek, Jan77,78; van de Ville, Dimitri46,47; Yiannakas, Marios C.11; Weber, Kenneth A. ., II64; Weiskopf, Nikolaus65,79; Wise, Richard G.53,80; Wyss, Patrik O.4; Xu, Junqian45
第一作者Cohen-Adad, Julien
摘要

In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject dataset across 42 centers (for a total of 260 participants), spanning the three main MRI manufacturers: GE, Philips and Siemens. Both datasets are publicly available via git-annex. Data were analysed using the Spinal Cord Toolbox to produce normative values as well as inter/intra-site and inter/intra-manufacturer statistics. Reproducibility for the spine generic protocol was high across sites and manufacturers, with an average inter-site coefficient of variation of less than 5% for all the metrics. Full documentation and results can be found at https://spine-generic.rtfd.io/. The datasets and analysis pipeline will help pave the way towards accessible and reproducible quantitative MRI in the spinal cord.

2021-08-16
语种英语
DOI10.1038/s41597-021-00941-8
发表期刊SCIENTIFIC DATA
卷号8期号:1页码:17
收录类别SCI
资助项目(Concordia University), Ives Levesque (McGill University) - Canada Research Chair in Quantitative Magnetic Resonance Imaging ; Canadian Institute of Health Research[CIHR FDN-143263] ; Canada Foundation for Innovation[32454] ; Canada Foundation for Innovation[34824] ; Fonds de Recherche du Quebec Sante[28826] ; Fonds de Recherche du Quebec-Nature et Technologies[2015-PR-182754] ; Natural Sciences and Engineering Research Council of Canada[435897-2013] ; Canada First Research Excellence Fund ; Spinal Research (UK) ; Wings for Life (Austria)[169111] ; Craig H. Neilsen Foundation (USA) ; National Institutes of Health (NIH)[R00EB016689] ; National Institutes of Health (NIH)[R01EB027779] ; Instituto Investigacion Carlos III (Spain)[PI18/00823] ; Czech Health Research Council[NV18-04-00159] ; Ministry of Health, Czech Republic -conceptual development of research organization[65269705] ; SpinalCure Australia ; European Research Council under the European Union[616905] ; Max Planck Society ; European Research Council[ERC StG 758974] ; European Union[681094] ; Swiss State Secretariat for Education, Research and Innovation (SERI)[15.0137] ; Swiss State Secretariat for Education, Research and Innovation (SERI)[01EW1711A] ; Swiss State Secretariat for Education, Research and Innovation (SERI)[634541] ; Engineering and Physical Sciences Research Council[R006032/1] ; Engineering and Physical Sciences Research Council[M020533/1] ; Rosetrees Trust (UK), UK Multiple Sclerosis Society[892/08] ; Rosetrees Trust (UK), UK Multiple Sclerosis Society[77/2017] ; Italian Ministry of Health Young Researcher Grant[GR-2013-02358177] ; FISR Project - MIUR/CNR[CUP B83B17000010001] ; Regione Puglia[MDBR-17-123-MPS] ; AstraZeneca ; CRIS Cancer Foundation ; Wellcome Trust (UK)[203139/Z/16/Z] ; Swiss National Science Foundation
出版者NATURE PORTFOLIO
WOS关键词OF-THE-ART ; MAGNETIZATION-TRANSFER ; MATTER ; WHITE
WOS研究方向Science & Technology - Other Topics
WOS类目Multidisciplinary Sciences
WOS记录号WOS:000686651700001
WOS分区Q1
资助机构(Concordia University), Ives Levesque (McGill University) - Canada Research Chair in Quantitative Magnetic Resonance Imaging ; Canadian Institute of Health Research ; Canada Foundation for Innovation ; Fonds de Recherche du Quebec Sante ; Fonds de Recherche du Quebec-Nature et Technologies ; Natural Sciences and Engineering Research Council of Canada ; Canada First Research Excellence Fund ; Spinal Research (UK) ; Wings for Life (Austria) ; Craig H. Neilsen Foundation (USA) ; National Institutes of Health (NIH) ; Instituto Investigacion Carlos III (Spain) ; Czech Health Research Council ; Ministry of Health, Czech Republic -conceptual development of research organization ; SpinalCure Australia ; European Research Council under the European Union ; Max Planck Society ; European Research Council ; European Union ; Swiss State Secretariat for Education, Research and Innovation (SERI) ; Engineering and Physical Sciences Research Council ; Rosetrees Trust (UK), UK Multiple Sclerosis Society ; Italian Ministry of Health Young Researcher Grant ; FISR Project - MIUR/CNR ; Regione Puglia ; AstraZeneca ; CRIS Cancer Foundation ; Wellcome Trust (UK) ; Swiss National Science Foundation
引用统计
被引频次:23[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.psych.ac.cn/handle/311026/39983
专题中国科学院行为科学重点实验室
通讯作者Cohen-Adad, Julien
作者单位1.Polytech Montreal, Inst Biomed Engn, NeuroPoly Lab, Montreal, PQ, Canada
2.Univ Montreal, Funct Neuroimaging Unit, CRIUGM, Montreal, PQ, Canada
3.Mila Quebec AI Inst, Montreal, PQ, Canada
4.Swiss Parapleg Ctr, Dept Radiol, Nottwil, Switzerland
5.Univ Queensland, Ctr Adv Imaging, Brisbane, Qld, Australia
6.Univ British Columbia, Dept Radiol, Vancouver, BC, Canada
7.Massachusetts Gen Hosp, Dept Radiol, Athinoula A Martinos Ctr Biomed Imaging, Charlestown, MA USA
8.Harvard Med Sch, Dept Radiol, Boston, MA 02115 USA
9.Harvard Massachusetts Inst Technol Hlth Sci & Tec, Cambridge, MA USA
10.Univ Queensland, Sch Informat Technol & Elect Engn, Brisbane, Qld, Australia
11.UCL, UCL Queen Sq Inst Neurol, Queen Sq MS Ctr, NMR Res Unit,Fac Brain Sci, London, England
12.Univ Med Ctr Hamburg Eppendorf, Dept Syst Neurosci, Hamburg, Germany
13.Med Coll Wisconsin, Dept Neurosurg, Milwaukee, WI 53226 USA
14.Aix Marseille Univ, CNRS, CRMBM, Marseille, France
15.Hop Univ Timone, AP HM, CEMEREM, Marseille, France
16.Vanderbilt Univ, Med Ctr, Inst Imaging Sci, Nashville, TN USA
17.Polytech Montreal, Dept Comp & Software Engn, Montreal, PQ, Canada
18.CHU St Justine Res Ctr, Montreal, PQ, Canada
19.CIMS, Ctr Rech CHUS, Sherbrooke, PQ, Canada
20.Univ Sherbrooke, Comp Sci Dept, Sherbrooke Connect Imaging Lab SCIL, Sherbrooke, PQ, Canada
21.Univ Strasbourg, CNRS, ICube, Strasbourg, France
22.UHB Univ Hosp Brno, Brno, Czech Republic
23.Masaryk Univ, Dept Radiol & Nucl Med, Brno, Czech Republic
24.McGill Univ, Montreal Neurol Inst, McConnell Brain Imaging Ctr, Montreal, PQ, Canada
25.Univ British Columbia, Dept Phys & Astron, Vancouver, BC, Canada
26.Max Planck Inst Human Cognit & Brain Sci, Leipzig, Germany
27.Stanford Univ, Sch Med, Richard M Lucas Ctr, Stanford, CA 94305 USA
28.Univ Zurich, Spinal Cord Injury Ctr Balgrist, Zurich, Switzerland
29.CNR, Inst Nanotechnol, Rome, Italy
30.IRCCS Santa Lucia Fdn, Rome, Italy
31.Juntendo Univ, Dept Radiol, Sch Med, Tokyo, Japan
32.Univ Pavia, Dept Brain & Behav Sci, Pavia, Italy
33.IRCCS Mondino Fdn, Brain MRI 3T Res Ctr, Pavia, Italy
34.Philips Healthcare, MR Clin Sci, Markham, ON, Canada
35.CREF Museo Storico Fis, Rome, Italy
36.Ctr Studi & Ric Enrico Fermi, Rome, Italy
37.Vall dHebron Barcelona Hosp Campus, Vall dHebron Inst Oncol, Radiom Grp, Barcelona, Spain
38.Univ Minnesota, Dept Radiol, Ctr Magnet Resonance Res, Minneapolis, MN 55455 USA
39.Cent European Inst Technol CEITEC, Multimodal & Funct Imaging Lab, Brno, Czech Republic
40.Toho Univ, Dept Radiol, Omori Med Ctr, Tokyo, Japan
41.Univ Tokyo, Dept Radiol, Tokyo, Japan
42.Northwestern Univ, Interdept Neurosci Program, Feinberg Sch Med, Chicago, IL 60611 USA
43.Stanford Univ, Sch Med, Dept Psychiat & Behav Sci, Stanford, CA 94305 USA
44.Univ Birmingham, Ctr Precis Rehabil Spinal Pain CPR Spine, Sch Sport Exercise & Rehabil Sci, Coll Life & Environm Sci, Birmingham, W Midlands, England
45.Icahn Sch Med Mt Sinai, Dept Radiol, BioMed Engn & Imaging Inst BMEII, New York, NY 10029 USA
46.Ecole Polytech Fed Lausanne, Ctr Neuroprosthet, Inst Bioengn, Geneva, Switzerland
47.Univ Geneva, Dept Radiol & Med Informat, Geneva, Switzerland
48.Tech Univ Dresden, Carl Gustav Carus Univ Hosp, Inst Diagnost & Intervent Neuroradiol, Dresden, Germany
49.Univ British Columbia, Dept Med Neurol, Vancouver, BC, Canada
50.Chinese Acad Sci, Inst Psychol, CAS Key Lab Behav Sci, Beijing, Peoples R China
51.Univ Chinese Acad Sci, Dept Psychol, Beijing, Peoples R China
52.Univ Oxford, Nuffield Dept Clin Neurosci, Wellcome Ctr Integrat Neuroimaging, FMRIB, Oxford, England
53.Cardiff Univ, CUBRIC, Cardiff, Wales
54.UCL, Med Phys & Biomed Engn Dept, Ctr Med Image Comp CMIC, London, England
55.Epilepsy Soc MRI Unit, Gerrards Cross, England
56.Univ Minnesota, Dept Pediat, Div Clin Behav Neurosci, Minneapolis, MN 55455 USA
57.Univ Hosp Olomouc, Dept Neurol, Olomouc, Czech Republic
58.Univ Hosp Olomouc, Dept Biomed Engn, Olomouc, Czech Republic
59.IRCCS Fdn Don Carlo Gnocchi ONLUS, Milan, Italy
60.Univ British Columbia, Dept Radiol, Vancouver, BC, Canada
61.Univ British Columbia, Dept Pathol & Lab Med, Vancouver, BC, Canada
62.Univ British Columbia, Dept Phys & Astron, Vancouver, BC, Canada
63.Univ British Columbia, Int Collaborat Repair Discoveries ICORD, Vancouver, BC, Canada
64.Stanford Univ, Sch Med, Dept Anesthesiol Perioperat & Pain Med, Div Pain Med, Stanford, CA 94305 USA
65.Max Planck Inst Human Cognit & Brain Sci, Dept Neurophys, Leipzig, Germany
66.Capital Med Univ, Beijing Tiantan Hosp, Dept Radiol, Beijing, Peoples R China
67.China Natl Clin Res Ctr Neurol Dis, Tiantan Image Res Ctr, Beijing, Peoples R China
68.Hosp Clin Barcelona, Inst Invest Biomed August Pi & Sunyer IDIBAPS, Lab Adv Imaging Neuroimmunol Dis, Ctr Neuroimmunol, Barcelona, Spain
69.Univ Barcelona, Barcelona, Spain
70.Fdn Campus Biotech Geneve, CH-1202 Geneva, Switzerland
71.Vanderbilt Univ, Med Ctr, Dept Radiol, Nashville, TN 37232 USA
72.Univ Calif San Francisco, Dept Neurol, UCSF Weill Inst Neurosci, San Francisco, CA 94143 USA
73.Vall dHebron Univ Hosp, Neuroradiol Sect, Barcelona, Spain
74.Univ Oberta Catalunya, E Hlth Ctr, Barcelona, Spain
75.Univ Queensland, Sch Biomed Sci, Fac Med, Brisbane, Qld, Australia
76.Univ Oklahoma, Hlth Sci Ctr, Oklahoma City, OK USA
77.Palacky Univ, Fac Med & Dent, Dept Neurol, Olomouc, Czech Republic
78.Univ Hosp Olomouc, Olomouc, Czech Republic
79.Univ Leipzig, Felix Bloch Inst Solid State Phys, Fac Phys & Earth Sci, Leipzig, Germany
80.G DAnnunzio Univ Chieti Pescara, Dept Neurosci Imaging & Clin Sci, Inst Adv Biomed Technol, Chieti, Italy
推荐引用方式
GB/T 7714
Cohen-Adad, Julien,Alonso-Ortiz, Eva,Abramovic, Mihael,et al. Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers[J]. SCIENTIFIC DATA,2021,8(1):17.
APA Cohen-Adad, Julien.,Alonso-Ortiz, Eva.,Abramovic, Mihael.,Arneitz, Carina.,Atcheson, Nicole.,...&Xu, Junqian.(2021).Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers.SCIENTIFIC DATA,8(1),17.
MLA Cohen-Adad, Julien,et al."Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers".SCIENTIFIC DATA 8.1(2021):17.
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