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Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers (vol 8, 219, 2021)
Cohen-Adad, Julien1,2,3; Alonso-Ortiz, Eva1; Abramovic, Mihael4; Arneitz, Carina4; Atcheson, Nicole5; Barlow, Laura6; Barry, Robert L.7,8,9; Barth, Markus10; Battiston, Marco11; Buchel, Christian12; Budde, Matthew13; Callot, Virginie14,15; Combes, Anna J. E.16; De Leener, Benjamin17,18; Descoteaux, Maxime19,20; de Sousa, Paulo Loureiro21; Dostal, Marek22; Doyon, Julien23; Dvorak, Adam24; Eippert, Falk25; Epperson, Karla R.26; Epperson, Kevin S.26; Freund, Patrick27; Finsterbusch, Jurgen12; Foias, Alexandru1; Fratini, Michela28,29; Fukunaga, Issei30; Gandini Wheeler-Kingshott, Claudia A. M.11,31,32; Germani, Giancarlo32; Gilbert, Guillaume33; Giove, Federico29,34; Gros, Charley1,5; Grussu, Francesco11,35; Hagiwara, Akifumi30; Henry, Pierre-Gilles36; Horak, Tomas37; Hori, Masaaki38; Joers, James36; Kamiya, Kouhei39; Karbasforoushan, Haleh40,41; Kerkovsky, Milos22; Khatibi, Ali23,42; Kim, Joo-Won43; Kinany, Nawal44,45; Kitzler, Hagen H.46; Kolind, Shannon6,24,47; Kong, Yazhuo48,49,50; Kudlicka, Petr37; Kuntke, Paul46; Kurniawan, Nyoman D.5; Kusmia, Slawomir51,52,53; Labounek, Rene54,55; Lagana, Maria Marcella56; Laule, Cornelia57; Law, Christine S.58; Lenglet, Christophe36; Leutritz, Tobias59; Liu, Yaou60,61; Llufriu, Sara62; Mackey, Sean58; Martinez-Heras, Eloy62; Mattera, Loan63; Nestrasil, Igor36,54; O'Grady, Kristin P.16,64; Papinutto, Nico65; Papp, Daniel1,50; Pareto, Deborah66; Parrish, Todd B.40; Pichiecchio, Anna31,32; Prados, Ferran11,52,67; Rovira, Alex66; Ruitenberg, Marc J.68; Samson, Rebecca S.11; Savini, Giovanni32; Seif, Maryam27,59; Seifert, Alan C.43; Smith, Alex K.50; Smith, Seth A.16,64; Smith, Zachary A.69; Solana, Elisabeth62; Suzuki, Y.39; Tackley, George51; Tinnermann, Alexandra12; Valosek, Jan70; Van de Ville, Dimitri44,45; Yiannakas, Marios C.11; Weber, Kenneth A., II58; Weiskopf, Nikolaus59,71; Wise, Richard G.51,72; Wyss, Patrik O.4; Xu, Junqian43
第一作者Julien Cohen-Adad
通讯作者邮箱jcohen@polymtl.ca
摘要

In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject dataset across 42 centers (for a total of 260 participants), spanning the three main MRI manufacturers: GE, Philips and Siemens. Both datasets are publicly available via git-annex. Data were analysed using the Spinal Cord Toolbox to produce normative values as well as inter/intra-site and inter/intra-manufacturer statistics. Reproducibility for the spine generic protocol was high across sites and manufacturers, with an average inter-site coefficient of variation of less than 5% for all the metrics. Full documentation and results can be found at https://spine-generic.rtfd.io/ . The datasets and analysis pipeline will help pave the way towards accessible and reproducible quantitative MRI in the spinal cord.

2021-09-10
语种英语
DOI10.1038/s41597-021-01026-2
发表期刊SCIENTIFIC DATA
卷号8期号:1页码:1
期刊论文类型实证研究
收录类别SCI
出版者NATURE PORTFOLIO
WOS研究方向Science & Technology - Other Topics
WOS类目Multidisciplinary Sciences
WOS记录号WOS:000694838900001
WOS分区Q1
引用统计
文献类型期刊论文
条目标识符http://ir.psych.ac.cn/handle/311026/40276
专题中国科学院行为科学重点实验室
作者单位1.Inst BioMed Engn, NeuroPoly Lab, PolyTech Montreal, Montreal, PQ, Canada
2.Univ Montreal, Funct Neuroimaging Unit, CRIUGM, Montreal, PQ, Canada
3.Quebec Inst, Montreal, PQ, Canada
4.Swiss Parapleg Centre, Dept Radiol, Nottwil, Switzerland
5.Univ Queensland, Centre Adv Imaging, Brisbane, Australia
6.Univ British Columbia, Dept Radiol, Vancouver, BC, Canada
7.Massachusetts Gen Hosp, Martinos Ctr BioMed Imaging, Dept Radiol, Athinoula, Charlestown, MA USA
8.Harvard Med Sch, Dept Radiol, Boston, MA USA
9.Massachusetts Inst Technol Hlth Sciences & Techno, Cambridge, MA USA
10.Univ Queensland, Sch Informat Technol & Elect Engn, Brisbane, Australia
11.UCL, UCL Queen Sq Inst Neurology,Fac Brain Sciences, Queen Sq MS Centre,NMR Res Unit, London, England
12.Univ Med Ctr Hamburg, Dept Syst Neuroscience, Eppendorf, Hamburg, Germany
13.Med Coll Wisconsin, Dept Neurosurgery, Milwaukee, WI USA
14.Marseille Univ, CNRS, CRMBM, Marseille, France
15.Hop Univ Timone, APHM, CEMEREM, Marseille, France
16.Vanderbilt Univ Inst Imaging Sci, Vanderbilt Univ Med Ctr, Nashville, TN USA
17.Dept Comp & Software Engn, PolyTech Montreal, Montreal, PQ, Canada
18.Justine Res Centre, CHU Sainte, Montreal, QC, Canada
19.Centre Rech CHUS, CIMS, Sherbrooke, Canada
20.Univ Sherbrooke, Comp Sci Dept, Sherbrooke Connect Imaging Lab, SCIL, Sherbrooke, Canada
21.Univ Strasbourg, CNRS, ICube, Strasbourg, France
22.Univ Hosp Brno, Masaryk Univ,Dept Radiol,UHB,Nucl Med, Brno, Czech Republic
23.McGill Univ, Montreal Neurol Inst, McConnell Brain Imaging Centre, Montreal, QC, Canada
24.Univ British Columbia, Dept Phys & Astronomy, Vancouver, BC, Canada
25.Max Planck Inst Human Cognit & Brain Sciences, Leipzig, Germany
26.Stanford Univ Sch Med, Lucas Ctr, Richard M, Stanford, CA USA
27.Univ Zurich, Spinal Cord Injury Ctr Balgrist, Zurich, Switzerland
28.Inst Nanotechnol, CNR, Rome, Italy
29.IRCCS Santa Lucia Fdn, Rome, Italy
30.Juntendo Univ Sch Med, Dept Radiol, Tokyo, Tokyo, Japan
31.Univ Pavia, Dept Brain & Behav Sciences, Pavia, Italy
32.IRCCS Mondino Fdn, Brain MRI 3T Res Centre, Pavia, Italy
33.MR Clin Sci, Philips Healthcare, Markham, ON, Canada
34.Museo stor Fis Centro studi Ric Enr Fermi, CREF, Rome, Italy
35.Vall d'Hebron Barcelona Hosp Campus, Vall d'Hebron Inst Oncology, Radi Grp, Barcelona, Spain
36.Univ Minnesota, Ctr Magnet Resonance Res, Dept Radiol, Minneapolis, MN USA
37.Cent European Inst Technol, Multimodal & funct imaging Lab, CEITEC, Brno, Czech Republic
38.Toho Univ Omori Med Ctr, Dept Radiol, Tokyo, Tokyo, Japan
39.Univ Tokyo, Dept Radiol, Tokyo, Tokyo, Japan
40.Northwestern Univ, Feinberg Sch Med, InterDept Neuroscience Program, Chicago, IL USA
41.Stanford Univ, Sch Med, Dept Psychiat & Behav Sciences, Stanford, CA USA
42.Univ Birmingham, Coll Life & Environm Sciences, Centre Precision Rehabil Spinal Pain,Sch Sport, CPR Spine,Exercise & Rehabil Sciences,Edgbaston, Birmingham, England
43.BioMed Engn & Imaging Inst, Icahn Sch Med Mt Sinai, Dept Radiol, BMEII, New York, NY USA
44.Inst BioEngn, Ctr Neuroprosthet, Ecole PolyTech Federale Lausanne, Geneva, Switzerland
45.Univ Geneva, Dept Radiol & Med Informat, Geneva, Switzerland
46.Carl Gustav Carus Univ Hosp, Inst Diagnost & Intervent Neuroradiol, Syst Univers Dresden, Dresden, Germany
47.Univ British Columbia, Dept Med, Neurology, Vancouver, BC, Canada
48.Inst Psychol, Chinese Acad Sciences, CAS Key Lab Behav Sci, Beijing, Beijing, Peoples R China
49.Univ Chinese Acad Sciences, Dept Psychol, Beijing, Beijing, Peoples R China
50.Univ Oxford, Wellcome Centre Integrative Neuroimaging, Nuffield Dept Clinical Neurosciences, FMRIB, Oxford, England
51.Cardiff Univ, CUBRIC, Wales, England
52.UCL, Centre Med Image Comp, Med Phys & BioMed Engn Dept, CMIC, London, England
53.Epilepsy Soc MRI Unit, Chalfont St Peter, Gerrards Cross, England
54.Univ Minnesota, Dept Pediat, Div Clin Behav Neuroscience, Minneapolis, MN USA
55.Univ Hosp Olomouc, Departments Neurol & BioMed Engn, Olomouc, Czech Republic
56.IRCCS Fondaz Don Carlo Gnocchi ONLUS, Milan, Italy
57.Univ British Columbia, Pathol & Lab Med,Departments Radiol, Phys & Astronomy, Int Collaborat Repair Discoveries,ICORD, Vancouver, BC, Canada
58.Stanford Univ Sch Med, Dept Anesthesiol, Div Pain Med, Perioperat & Pain Med, Stanford, CA USA
59.Max Planck Inst Human Cognit & Brain Sciences, Dept Neurophys, Leipzig, Germany
60.Capital Med Univ, Beijing Tiantan Hosp, Dept Radiol, Beijing, Beijing, Peoples R China
61.Tiantan Image Res Ctr, China Natl Clin Res Ctr Neurol Dis, Beijing, Beijing, Peoples R China
62.& Universitat Barcelona, Hosp Clin Barcelona, Institut d'Investigac Biomediques August Pi Sunye, Ctr Neuroimmunol,Lab Adv Imaging Neuroimmunol Dis, Barcelona, Spain
63.Fondat Campus Biotech Geneve, 1202 Geneva, Switzerland
64.Vanderbilt Univ Sch Med, Dept Radiol, Nashville, TN USA
65.Univ Calif San Francisco, UCSF Weill Inst Neurosciences, Dept Neurol, San Francisco, CA USA
66.Vall d'Hebron Univ Hosp, Neuroradiol Sect, Barcelona, Spain
67.Universitat Oberta Catalunya, Ehealth Centre, Barcelona, Spain
68.Univ Queensland, Fac Med, Sch BioMed Sciences, Brisbane, Australia
69.Univ Oklahoma Hlth Sciences Ctr, Oklahoma City, OK USA
70.Palacky Univ, Univ Hosp Olomouc, Fac Med & Dent, Dept Neurol, Olomouc, Czech Republic
71.Univ Leipzig, Felix Bloch Inst Solid State Phys, Fac Phys & Earth Sciences, Leipzig, Germany
72.D'Annunzio University Chieti, Inst Adv BioMed Technol,Dept Neuroscience, Imaging & Clin Sciences,G, Chieti-pescara, Italy
推荐引用方式
GB/T 7714
Cohen-Adad, Julien,Alonso-Ortiz, Eva,Abramovic, Mihael,et al. Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers (vol 8, 219, 2021)[J]. SCIENTIFIC DATA,2021,8(1):1.
APA Cohen-Adad, Julien.,Alonso-Ortiz, Eva.,Abramovic, Mihael.,Arneitz, Carina.,Atcheson, Nicole.,...&Xu, Junqian.(2021).Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers (vol 8, 219, 2021).SCIENTIFIC DATA,8(1),1.
MLA Cohen-Adad, Julien,et al."Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers (vol 8, 219, 2021)".SCIENTIFIC DATA 8.1(2021):1.
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