PSYCH OpenIR  > 中国科学院心理健康重点实验室
A comparison of methods to harmonize cortical thickness measurements across scanners and sites
Sun, Delin1,2,66; Rakesh, Gopalkumar1,2; Haswell, Courtney C.1,2; Logue, Mark3,4,5,6; Baird, C. Lexi1,2; O'Leary, Erin N.7; Cotton, Andrew S.7; Xie, Hong7; Tamburrino, Marijo7; Chen, Tian7,8; Dennis, Emily L.8,9,10,11; Jahanshad, Neda9; Salminen, Lauren E.9; Thomopoulos, Sophia, I9; Rashid, Faisal9; Ching, Christopher R. K.9; Koch, Saskia B. J.12,13; Frijling, Jessie L.12; Nawijn, Laura12,14; van Zuiden, Mirjam12; Zhu, Xi15,16; Suarez-Jimenez, Benjamin15,16,80; Sierk, Anika17; Walter, Henrik17; Manthey, Antje17; Stevens, Jennifer S.18; Fani, Negar18; van Rooij, Sanne J. H.18; Stein, Murray19; Bomyea, Jessica19; Koerte, Inga K.8,20; Choi, Kyle21; van der Werff, Steven J. A.22,23; Vermeiren, Robert R. J. M.22; Herzog, Julia24; Lebois, Lauren A. M.25,26; Baker, Justin T.27; Olson, Elizabeth A.25,28; Straube, Thomas29; Korgaonkar, Mayuresh S.30; Andrew, Elpiniki31; Zhu, Ye32,33; Li, Gen32,33; Ipser, Jonathan34; Hudson, Anna R.35; Peverill, Matthew36; Sambrook, Kelly37; Gordon, Evan79; Baugh, Lee41,42,43; Forster, Gina41,42,44; Simons, Raluca M.42,45; Simons, Jeffrey S.43,45; Magnotta, Vincent46; Maron-Katz, Adi47; du Plessis, Stefan48; Disner, Seth G.49,50; Davenport, Nicholas49,50; Grupe, Daniel W.51; Nitschke, Jack B.52; DeRoon-Cassini, Terri A.53; Fitzgerald, Jacklynn M.54; Krystal, John H.55,56; Levy, Ifat55,56; Olff, Miranda12,57; Veltman, Dick J.58; Wang, Li32,33; Neria, Yuval15,16; De Bellis, Michael D.59; Jovanovic, Tanja60; Daniels, Judith K.61; Shenton, Martha8,62; van de Wee, Nic J. A.22,23; Schmahl, Christian24; Kaufman, Milissa L.25,63; Rosso, Isabelle M.25,28; Sponheim, Scott R.49,50; Hofmann, David Bernd29; Bryant, Richard A.64; Fercho, Kelene A.41,42,43,65; Stein, Dan J.34; Mueller, Sven C.35; Hosseini, Bobak67; Phan, K. Luan67,68; McLaughlin, Katie A.69; Davidson, Richard J.51,52,70; Larson, Christine L.71; May, Geoffrey38,39,40,72; Nelson, Steven M.38,39,40,72; Abdallah, Chadi G.55,56; Gomaa, Hassaan73; Etkin, Amit47,74; Seedat, Soraya48; Harpaz-Rotem, Ilan55,56; Liberzon, Israel75; van Erp, Theo G. M.76,77; Quide, Yann64,81; Wang, Xin78; Thompson, Paul M.9; Morey, Rajendra A.1,2
第一作者Delin Sun
通讯作者邮箱rajendra.morey@duke.edu (r.a. morey)
摘要

Results of neuroimaging datasets aggregated from multiple sites may be biased by site-specific profiles in participants' demographic and clinical characteristics, as well as MRI acquisition protocols and scanning platforms. We compared the impact of four different harmonization methods on results obtained from analyses of cortical thickness data: (1) linear mixed-effects model (LME) that models site-specific random intercepts (LME INT), (2) LME that models both site-specific random intercepts and age-related random slopes (LME INT+ SLP), (3) ComBat, and (4) ComBat with a generalized additive model (ComBat-GAM). Our test case for comparing harmonization methods was cortical thickness data aggregated from 29 sites, which included 1,340 cases with posttraumatic stress disorder (PTSD) (6.2-81.8 years old) and 2,057 trauma-exposed controls without PTSD (6.3-85.2 years old). We found that, compared to the other data harmonization methods, data processed with ComBat-GAM was more sensitive to the detection of significant case-control differences (X-2 (3) = 63.704, p < 0.001) as well as casecontrol differences in age-related cortical thinning (X-2 (3) = 12.082, p = 0.007). Both ComBat and ComBat-GAM outperformed LME methods in detecting sex differences (X-2 (3) = 9.114, p = 0.028) in regional cortical thickness. ComBat-GAM also led to stronger estimates of age-related declines in cortical thickness (corrected p-values < 0.001), stronger estimates of case-related cortical thickness reduction (corrected p-values < 0.001), weaker estimates of age-related declines in cortical thickness in cases than controls (corrected p-values < 0.001), stronger estimates of cortical thickness reduction in females than males (corrected p-values < 0.001), and stronger estimates of cortical thickness reduction in females relative to males in cases than controls (corrected p-values < 0.001). Our results support the use of ComBat-GAM to minimize confounds and increase statistical power when harmonizing data with non-linear effects, and the use of either ComBat or ComBat-GAM for harmonizing data with linear effects.

关键词Data Harmonization Scanner Effects Site Effects Cortical Thickness ComBat ComBat-GAM Linear Mixed-Effects Model General Additive Model PTSD
2022-11-01
语种英语
DOI10.1016/j.neuroimage.2022.119509
发表期刊NEUROIMAGE
ISSN1053-8119
卷号261页码:19
期刊论文类型实证研究
收录类别SCI
资助项目DoD[W81XWH-10-1-0925] ; Center for Brain and Behavior Research Pilot Grant ; South Dakota Governor's Research Center Grant ; VA CDA[CX001600] ; NHMRC[1073041] ; NHMRC[R01 MH111671] ; VISN6 MIRECC ; German Research Foundation[DA 1222/4-1] ; German Research Foundation[WA 1539/8-2] ; VA RRD[1IK2RX000709] ; VA RRD[1K1RX002325] ; VA RRD[1K2RX002922] ; VA RRD[MH101380] ; VA RRD[I01RX000622] ; NIMH[R01-MH043454] ; NIMH[K01-MH122774] ; NIMH[K01 MH118428-01] ; NIMH[R01MH105535] ; NIMH[1R21MH102634] ; ZonMw, the Netherlands organization for Health Research and Development[40-0081298-10041] ; Academic Medical Center Research Council[110614] ; VA CSRD[1IK2CX001680] ; VISN17 Center of Excellence pilot funding ; German Federal Ministry of Education and Research[BMBF RELEASE 01KR1303A] ; German Research Society (Deutsche Forschungsgemeinschaft, DFG)[SFB/TRR 58] ; Anonymous Women's Health Fund ; Kasparian Fund ; Trauma Scholars Fund ; Barlow Family Fund ; Department of Veterans Affairs ; NIAAA ; NCATS ; NIH[R01 MH106574] ; NIH[F32MH109274] ; BOF 2-4 year project[01J05415] ; Dana Foundation ; University of Wisconsin Institute for Clinical and Translational Research ; National Science Foundation Graduate Research Fellowship ; National Institute of Child Health and Human Development[P30-HD003352] ; Veterans Affairs Merit Review Program[10/01/08 09/30/13] ; South African Medical Research Council SHARED ROOTS Flagship Project ; South African Research Chair in PTSD from the Department of Science and Technology ; National Research Foundation ; US Department of Defense[W81XWH08-2-0159] ; CDMRP[W81XWH-08-2-0038] ; South African Medical Research Council ; NARSAD ; Department of Defense[W81XWH-12-2-0012] ; Big Data to Knowledge (BD2K) program[U54 EB020403] ; 'NIMH'[R01-MH043454] ; 'NIMH'[1R21MH102634] ; 'NIMH'[R01 MH63407] ; 'NIMH'[K01 MH118467] ; 'NIMH'[W81XWH-08-2-0159] ; 'NIMH'[K23MH112873] ; 'NIMH'[R01MH113574] ; 'NIMH'[R01-MH103291] ; 'NIMH'[R01 AA12479] ; 'NIMH'[R01 MH61744] ; 'NIMH'[T32-MH018931] ; [5U01AA021681-08] ; [K24MH71434] ; [K24 DA028773] ; [K99NS096116] ; [R01MH117601] ; [R01AG059874] ; [MJFF 14848] ; [MH098212] ; [MH071537] ; [M01RR00039] ; [UL1TR000454] ; [HD071982] ; [HD085850] ; [R21MH112956] ; [R01MH105355] ; [L30 MH114379] ; [RFA-FSP-01-2013/SHARED ROOTS] ; [R56AG058854] ; [R01MH116147] ; [P41 EB015922] ; [1R01MH110483] ; [1R21 MH098198] ; [R01MH105355-01A]
出版者ACADEMIC PRESS INC ELSEVIER SCIENCE
WOS关键词MULTISITE ; DISORDER ; VOLUME
WOS研究方向Neurosciences & Neurology ; Radiology, Nuclear Medicine & Medical Imaging
WOS类目Neurosciences ; Neuroimaging ; Radiology, Nuclear Medicine & Medical Imaging
WOS记录号WOS:000889462400003
WOS分区Q1
资助机构DoD ; Center for Brain and Behavior Research Pilot Grant ; South Dakota Governor's Research Center Grant ; VA CDA ; NHMRC ; VISN6 MIRECC ; German Research Foundation ; VA RRD ; NIMH ; ZonMw, the Netherlands organization for Health Research and Development ; Academic Medical Center Research Council ; VA CSRD ; VISN17 Center of Excellence pilot funding ; German Federal Ministry of Education and Research ; German Research Society (Deutsche Forschungsgemeinschaft, DFG) ; Anonymous Women's Health Fund ; Kasparian Fund ; Trauma Scholars Fund ; Barlow Family Fund ; Department of Veterans Affairs ; NIAAA ; NCATS ; NIH ; BOF 2-4 year project ; Dana Foundation ; University of Wisconsin Institute for Clinical and Translational Research ; National Science Foundation Graduate Research Fellowship ; National Institute of Child Health and Human Development ; Veterans Affairs Merit Review Program ; South African Medical Research Council SHARED ROOTS Flagship Project ; South African Research Chair in PTSD from the Department of Science and Technology ; National Research Foundation ; US Department of Defense ; CDMRP ; South African Medical Research Council ; NARSAD ; Department of Defense ; Big Data to Knowledge (BD2K) program ; 'NIMH'
引用统计
被引频次:9[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.psych.ac.cn/handle/311026/44076
专题中国科学院心理健康重点实验室
通讯作者Morey, Rajendra A.
作者单位1.Duke Univ, Brain Imaging & Anal Ctr, Durham, NC USA
2.Dept Vet Affairs VA Midatlantic Mental Illness Re, Durham, NC USA
3.VA Boston Healthcare Syst, Natl Ctr PTSD, Boston, MA USA
4.Boston Univ, Dept Psychiat, Sch Med, Boston, MA 02118 USA
5.Boston Univ, Sch Med, Biomed Genet, Boston, MA 02118 USA
6.Boston Univ, Sch Publ Hlth, Dept Biostat, Boston, MA USA
7.Univ Toledo, Dept Psychiat, Toledo, OH USA
8.Brigham & Womens Hosp, Psychiat Neuroimaging Lab, 75 Francis St, Boston, MA 02115 USA
9.USC, Imaging Genet Ctr, Mark & Mary Stevens Neuroimaging & Informat Inst, Keck Sch Med, Marina Del Rey, CA USA
10.Univ Utah, Dept Neurol, Salt Lake City, UT USA
11.Stanford Neurodev Affect & Psychopathol Lab, Stanford, CA USA
12.Univ Amsterdam, Amsterdam Univ Med Ctr, Acad Med Ctr, Dept Psychiat, Amsterdam, Netherlands
13.Radboud Univ Nijmegen, Ctr Cognit Neuroimaging, Donders Inst Brain Cognit & Behav, Nijmegen, Netherlands
14.Vrije Univ Amsterdam, Amsterdam Univ Med Ctr, VU Univ Med Ctr, Dept Psychiat, Amsterdam, Netherlands
15.Columbia Univ, Dept Psychiat, Med Ctr, New York, NY USA
16.New York State Psychiat Inst & Hosp, New York, NY 10032 USA
17.Univ Med Ctr Charite, Berlin, Germany
18.Emory Univ, Sch Med, Dept Psychiat & Behav Sci, Atlanta, GA USA
19.Univ Calif San Diego, Dept Psychiat, La Jolla, CA 92093 USA
20.Ludwig Maximilians Univ Munchen, Dept Child & Adolescent Psychiat Psychosomat & Ps, Munich, Germany
21.Univ Calif San Diego, Hlth Serv Res Ctr, La Jolla, CA 92093 USA
22.Leiden Univ Med Ctr, Dept Psychiat, Leiden, Netherlands
23.Leiden Inst Brain & Cognit, Leiden, Netherlands
24.Heidelberg Univ, Med Fac Mannheim, Cent Inst Mental Hlth, Dept Psychosomat Med & Psychotherapy, Heidelberg, Germany
25.Harvard Med Sch, Dept Psychiat, Boston, MA 02115 USA
26.McLean Hosp, Div Depress & Anxiety Disorders, 115 Mill St, Belmont, MA 02178 USA
27.Harvard Univ, McLean Hosp, Inst Technol Psychiat, Belmont, MA 02178 USA
28.McLean Hosp, Ctr Depress Anxiety & Stress Res, 115 Mill St, Belmont, MA 02178 USA
29.Univ Munster, Inst Med Psychol & Syst Neurosci, Munster, Germany
30.Univ Sydney, Brain Dynam Ctr, Westmead Inst Med Res, Westmead, NSW, Australia
31.Univ Sydney, Dept Psychol, Westmead, NSW, Australia
32.Chinese Acad Sci, Chinese Acad Sci Key Lab Mental Hlth, Inst Psychol, Lab Traumat Stress Studies, Beijing, Peoples R China
33.Univ Chinese Acad Sci, Dept Psychol, Beijing, Peoples R China
34.Univ Cape Town, Dept Psychiat & Neurosci Inst, SA MRC Unit Risk & Resilience Mental Disorders, Cape Town, South Africa
35.Univ Ghent, Dept Expt Clin & Hlth Psychol, Ghent, Belgium
36.Univ Washington, Dept Psychol, Seattle, WA 98195 USA
37.Univ Washington, Dept Radiol, Seattle, WA 98195 USA
38.Vet Integrated Serv Network 17 Ctr Excellence Res, Waco, TX USA
39.Baylor Univ, Dept Psychol & Neurosci, Waco, TX 76798 USA
40.Univ Texas Dallas, Ctr Vital Longev, Sch Behav & Brain Sci, Dallas, TX USA
41.Univ South Dakota, Sanford Sch Med, Div Basic Biomed Sci, Vermillion, SD USA
42.Univ South Dakota, Ctr Brain & Behav Res, Vermillion, SD USA
43.Sioux Falls VA Hlth Care Syst, Sioux Falls, SD USA
44.Univ Otago, Brain Hlth Res Ctr, Dept Anat, Dunedin, New Zealand
45.Univ South Dakota, Dept Psychol, Vermillion, SD USA
46.Univ Iowa, Dept Radiol Psychiat & Biomed Engn, Iowa City, IA USA
47.Stanford Univ, Dept Psychiat & Behav Sci, Stanford, CA 94305 USA
48.Stellenbosch Univ, Fac Med & Hlth Sci, Dept Psychiat, Cape Town, South Africa
49.Minneapolis VA Hlth Care Syst, Minneapolis, MN USA
50.Univ Minnesota, Dept Psychiat, Minneapolis, MN 55455 USA
51.Univ Wisconsin, Ctr Hlth Minds, Madison, WI USA
52.Univ Wisconsin, Dept Psychiat, Madison, WI 53706 USA
53.Med Coll Wisconsin, Dept Surg, Div Trauma & Acute Care Surg, Milwaukee, WI USA
54.Marquette Univ, Dept Psychol, Milwaukee, WI 53233 USA
55.Natl Ctr PTSD, Div Clin Neurosci, West Haven, CT USA
56.Yale Univ, Sch Med, Dept Psychiat, New Haven, CT USA
57.ARQ Natl Psychotrauma Ctr, Diemen, Netherlands
58.Amsterdam Univ Med Ctr, Dept Psychiat, Locat VUMC, Amsterdam, Netherlands
59.Duke Univ, Dept Psychiat & Behav Sci, Hlth Childhood Brain Dev Dev Traumatol Res Progra, Durham, NC USA
60.Wayne State Univ, Sch Med, Dept Psychiat & Behav Neurosci, Detroit, MI USA
61.Univ Groningen, Dept Clin Psychol, Groningen, Netherlands
62.VA Boston Healthcare Syst, Brockton Div, Brockton, MA USA
63.McLean Hosp, Div Womens Mental Hlth, 115 Mill St, Belmont, MA 02178 USA
64.Univ New South Wales, Sch Psychol, Sydney, NSW, Australia
65.US Fed Aviat Adm, Civil Aerosp Med Inst, Oklahoma City, OK USA
66.Educ Univ Hong Kong, Dept Psychol, Hong Kong, Peoples R China
67.Univ Illinois, Dept Psychiat, Chicago, IL 60612 USA
68.Jesse Brown VA Chicago Hlth Care Syst, Mental Hlth Serv Line, Chicago, IL USA
69.Harvard Univ, Dept Psychol, 33 Kirkland St, Cambridge, MA 02138 USA
70.Univ Wisconsin, Dept Psychol, 1202 W Johnson St, Madison, WI 53706 USA
71.Univ Wisconsin, Dept Psychol, Milwaukee, WI 53201 USA
72.Texas A&M Univ, Hlth Sci Ctr, Dept Psychiat & Behav Sci, Bryan, TX USA
73.Penn State Univ, Dept Psychiat & Behav Hlth, Hershey, PA USA
74.VA Palo Alto Hlth Care Syst, Palo Alto, CA USA
75.Texas A&M Univ, Dept Psychiat & Behav Sci, College Stn, TX USA
76.Univ Calif Irvine, Dept Psychiat & Human Behav, Clin Translat Neurosci Lab, Irvine, CA 92717 USA
77.Univ Calif Irvine, Ctr Neurobiol Learning & Memory, Irvine, CA USA
78.Univ Toledo, Dept Math & Stat, Toledo, OH USA
79.Washington Univ, Dept Radiol, St Louis, MO 63110 USA
80.Univ Rochester, Med Ctr, Del Monte Inst Neurosci, Rochester, NY 14642 USA
81.Neurosci Res Australia, Randwick, NSW, Australia
推荐引用方式
GB/T 7714
Sun, Delin,Rakesh, Gopalkumar,Haswell, Courtney C.,et al. A comparison of methods to harmonize cortical thickness measurements across scanners and sites[J]. NEUROIMAGE,2022,261:19.
APA Sun, Delin.,Rakesh, Gopalkumar.,Haswell, Courtney C..,Logue, Mark.,Baird, C. Lexi.,...&Morey, Rajendra A..(2022).A comparison of methods to harmonize cortical thickness measurements across scanners and sites.NEUROIMAGE,261,19.
MLA Sun, Delin,et al."A comparison of methods to harmonize cortical thickness measurements across scanners and sites".NEUROIMAGE 261(2022):19.
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